3.1.1 Using the JTAG 10-pin Connector
The pinout for the 10-pin JTAG connector is shown in Figure 4-2.
Be sure to use the correct orientation of the 10-pin header when connecting the JTAGICE mkII to the target application PCB. A 50-mil stand-off adapter is available from Atmel, if required.
For more information on the JTAG physical interface, see Physical Interfaces: JTAG.